Company: iQue
Dr. Mario 64
Densetsu no Starfy
Yoshi's Island: Super Mario Advance 3
WarioWare, Inc.: Mega Microgame$!
Excitebike 64
Mario Kart 64
Paper Mario
Wave Race 64
Bird & Beans
Wario Land 4
Metroid: Zero Mission
Super Mario World: Super Mario Advance 2
Doubutsu no Mori
Super Mario 64 DS
Yoshi's Story
New Super Mario Bros.
Super Mario Advance
F-Zero X
Yoshi Touch & Go
Tomato Adventure
Mario Kart: Super Circuit
The Legend of Zelda: Ocarina of Time
Nintendogs: Labrador & Friends
New Trivia!
Super Smash Bros.
Super Mario 3D Land
Advance Wars
Mario & Luigi: Superstar Saga
WarioWare: Touched!
DK: King of Swing
Mario Kart 7
Star Fox 64
Super Mario 64: Shindou Pak Taiou Version
Metroid Fusion
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Originally, iQue was founded as a joint venture between Nintendo and Taiwanese-American technologist Wei Yen as a Chinese video game console manufacturing company. However, by 2013 the company became a wholly-owned subsidiary of Nintendo, and in 2019 they began hiring for developers, programmers and testers, indicating that they were transitioning into a development company to support games made by Nintendo EPD.
iQue being wholly-owned by Nintendo:
http://nintendoeverything.com/up-to-date-listing-of-nintendo-subsidiaries/
https://www.nintendo.co.jp/ir/pdf/2013/security_q1303.pdf#page=5
iQue transitioning into a development company:
https://web.archive.org/web/20180304204801/http://www.ique.com/hr/jobs.html
http://nintendoeverything.com/up-to-date-listing-of-nintendo-subsidiaries/
https://www.nintendo.co.jp/ir/pdf/2013/security_q1303.pdf#page=5
iQue transitioning into a development company:
https://web.archive.org/web/20180304204801/http://www.ique.com/hr/jobs.html